Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-738G5.2.1-8	chr8:50819423-50820006	ENSG00000271148.1

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10112818	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10216383	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12543434	0.87[EUR][1000 genomes]
rs12549981	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12679386	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13264385	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs13271446	0.87[EUR][1000 genomes]
rs1486258	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1552380	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17676077	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2385554	0.81[ASN][1000 genomes]
rs2449961	0.84[ASN][1000 genomes]
rs318851	0.81[ASN][1000 genomes]
rs318853	0.84[ASN][1000 genomes]
rs36160411	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs379601	0.80[ASN][1000 genomes]
rs3812424	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3812426	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs404309	0.80[ASN][1000 genomes]
rs451034	0.80[ASN][1000 genomes]
rs62503966	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6991925	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs923060	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50814000-50819600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:50814000-50819800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr8:50816000-50821800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:50818400-50821400	Enhancers	Pancreatic Islets	Pancreatic Islet

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