Variant report

Variant	rs12551079
Chromosome Location	chr9:96464348-96464349
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10992874	1.00[ASN][1000 genomes]
rs10992883	0.97[ASN][1000 genomes]
rs1132027	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12551694	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12552323	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12553909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12555927	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs17535326	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1963	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2001299	0.97[ASN][1000 genomes]
rs2001609	1.00[CHB][hapmap]
rs3813386	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3829059	0.85[CEU][hapmap];1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs55783552	1.00[AFR][1000 genomes]
rs56310424	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7033532	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7038293	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs7038310	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1036609	chr9:96375217-96477641	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96463400-96464800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:96463400-96464800	Enhancers	Stomach Smooth Muscle	stomach
3	chr9:96464000-96465000	Enhancers	Fetal Stomach	stomach
4	chr9:96464000-96469800	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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