Variant report
| Variant | rs2001299 |
|---|---|
| Chromosome Location | chr9:96483513-96483514 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs10992874 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10992883 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12551079 | 0.97[ASN][1000 genomes] |
| rs12552323 | 1.00[JPT][hapmap] |
| rs12553909 | 0.97[ASN][1000 genomes] |
| rs1963 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2001609 | 1.00[CHB][hapmap] |
| rs7033532 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs7038293 | 1.00[CHB][hapmap] |
| rs7038310 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv893586 | chr9:96363859-96493773 | Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 2 | esv1805275 | chr9:96470473-96501599 | Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | esv1832783 | chr9:96470686-96501599 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | esv1798985 | chr9:96470848-96501850 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | esv1799910 | chr9:96470848-96501905 | Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:96482800-96484800 | Weak transcription | Stomach Smooth Muscle | stomach |
