Variant report

Variant	rs12552373
Chromosome Location	chr9:10311676-10311677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10511539	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10511541	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10511542	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10511543	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10959062	1.00[CHB][hapmap]
rs10959064	1.00[CHB][hapmap]
rs12001726	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12005495	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12005579	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12005969	1.00[JPT][hapmap]
rs12551193	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs12553386	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12554683	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12554950	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs12555149	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1323495	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16925686	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs16925695	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs16925703	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs16925713	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs16925748	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs16925753	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17703834	0.82[CHB][hapmap]
rs1885999	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1951785	0.90[ASN][1000 genomes]
rs749634	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs942157	0.82[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034731	chr9:9776126-10481262	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892295	chr9:9832245-10380406	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1030657	chr9:10002355-10481262	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1033178	chr9:10169848-10428731	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2758179	chr9:10188450-10370398	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2759666	chr9:10188450-10370398	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2762791	chr9:10253852-10325264	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1018748	chr9:10254793-10325252	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1033188	chr9:10255910-10325252	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1025315	chr9:10261734-10325252	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1016235	chr9:10287340-10322351	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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