Variant report

Variant	rs749634
Chromosome Location	chr9:10331967-10331968
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10511539	1.00[JPT][hapmap]
rs10511541	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10511542	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10511543	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10959062	1.00[CHB][hapmap]
rs10959064	1.00[CHB][hapmap]
rs12001726	1.00[JPT][hapmap]
rs12005495	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12005579	1.00[JPT][hapmap]
rs12005969	1.00[JPT][hapmap]
rs12551193	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs12552373	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12553386	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12554683	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12554950	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs12555149	1.00[JPT][hapmap]
rs1323495	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16925686	1.00[JPT][hapmap]
rs16925695	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs16925703	1.00[JPT][hapmap]
rs16925713	1.00[JPT][hapmap]
rs16925748	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs16925753	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1885999	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1951785	0.97[ASN][1000 genomes]
rs942157	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034731	chr9:9776126-10481262	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892295	chr9:9832245-10380406	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1030657	chr9:10002355-10481262	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1033178	chr9:10169848-10428731	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2758179	chr9:10188450-10370398	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2759666	chr9:10188450-10370398	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv516073	chr9:10314941-10333382	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:10325800-10335800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr9:10330800-10332400	Enhancers	Fetal Heart	heart
3	chr9:10331400-10333400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr9:10331600-10332600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr9:10331600-10338200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:10331600-10338200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links