Variant report

Variant	rs12552631
Chromosome Location	chr9:13433288-13433289
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12554694	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73412139	0.87[ASN][1000 genomes]
rs7857179	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv831515	chr9:13333205-13517308	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12552631	RPS26	trans	lymphoblastoid	seeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13431400-13439600	Weak transcription	Right Ventricle	heart
2	chr9:13431400-13446400	Weak transcription	Left Ventricle	heart
3	chr9:13431800-13434000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr9:13431800-13437600	Weak transcription	Fetal Brain Male	brain
5	chr9:13432000-13439800	Weak transcription	Fetal Lung	lung
6	chr9:13432400-13433400	Enhancers	HUVEC	blood vessel
7	chr9:13432400-13437800	Weak transcription	Brain Germinal Matrix	brain
8	chr9:13432600-13434000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr9:13432600-13434400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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