Variant report

Variant	rs73412139
Chromosome Location	chr9:13447836-13447837
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12552631	0.87[ASN][1000 genomes]
rs12554694	0.94[ASN][1000 genomes]
rs7857189	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv831515	chr9:13333205-13517308	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13444400-13448000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr9:13444400-13451000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:13444600-13450600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr9:13444800-13448000	Weak transcription	Fetal Brain Female	brain
5	chr9:13445200-13448200	Enhancers	Brain Hippocampus Middle	brain
6	chr9:13445200-13450200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr9:13445400-13448200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:13445400-13448200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:13445800-13448000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr9:13446400-13448000	Active TSS	Right Atrium	heart
11	chr9:13446600-13448000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr9:13446600-13450800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr9:13446800-13448000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr9:13447200-13448200	Enhancers	Colon Smooth Muscle	Colon
15	chr9:13447200-13448200	Enhancers	Ovary	ovary
16	chr9:13447200-13448800	Enhancers	HUVEC	blood vessel
17	chr9:13447400-13448000	Enhancers	Brain Substantia Nigra	brain
18	chr9:13447400-13448200	Flanking Active TSS	Adipose Nuclei	Adipose
19	chr9:13447400-13448200	Enhancers	Fetal Stomach	stomach
20	chr9:13447400-13452200	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr9:13447600-13448200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr9:13447600-13448200	Enhancers	Brain Anterior Caudate	brain
23	chr9:13447600-13448200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr9:13447600-13448200	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr9:13447600-13448200	Flanking Active TSS	Fetal Lung	lung
26	chr9:13447600-13448600	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr9:13447800-13448000	Enhancers	Fetal Muscle Leg	muscle
28	chr9:13447800-13448000	Enhancers	Stomach Smooth Muscle	stomach
29	chr9:13447800-13448200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr9:13447800-13448200	Enhancers	Brain Angular Gyrus	brain
31	chr9:13447800-13448200	Enhancers	Fetal Brain Male	brain
32	chr9:13447800-13448200	Active TSS	Fetal Muscle Trunk	muscle
33	chr9:13447800-13448200	Enhancers	Rectal Smooth Muscle	rectum
34	chr9:13447800-13448200	Enhancers	K562	blood
35	chr9:13447800-13448800	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr9:13447800-13448800	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr9:13447800-13448800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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