Variant report

Variant	rs12552912
Chromosome Location	chr9:97293249-97293250
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97291272..97293465-chr9:97298151..97299892,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10119223	0.86[ASN][1000 genomes]
rs10993226	0.86[ASN][1000 genomes]
rs12551995	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12552009	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2679611	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2790400	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2790404	0.87[ASN][1000 genomes]
rs2987886	0.90[ASN][1000 genomes]
rs2987887	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2987888	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2987889	0.90[ASN][1000 genomes]
rs2993973	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2993975	0.89[ASN][1000 genomes]
rs4291336	0.86[ASN][1000 genomes]
rs4744349	0.84[ASN][1000 genomes]
rs488270	0.83[ASN][1000 genomes]
rs491123	0.83[ASN][1000 genomes]
rs497361	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs504644	0.90[ASN][1000 genomes]
rs543698	0.83[ASN][1000 genomes]
rs547693	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs549615	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs572689	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs573371	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs573847	0.83[ASN][1000 genomes]
rs605323	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs606207	0.89[ASN][1000 genomes]
rs607160	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs608837	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs663092	0.93[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs678363	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9409801	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9696211	0.85[ASN][1000 genomes]
rs9696774	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	esv1840205	chr9:97202200-97366400	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv893595	chr9:97268182-97330693	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv525298	chr9:97289583-97312584	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv2572120	chr9:97291950-97293535	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3421699	chr9:97292669-97293340	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3483714	chr9:97292710-97293271	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv6187	chr9:97292718-97293365	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv2357961	chr9:97292721-97293301	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3007	chr9:97292730-97293443	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3483712	chr9:97292788-97293339	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3516742	chr9:97292829-97293353	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3516743	chr9:97292907-97293249	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97278000-97295200	Weak transcription	Liver	Liver

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