Variant report

Variant	rs12553066
Chromosome Location	chr9:16212321-16212322
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10119177	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10123661	0.91[ASN][1000 genomes]
rs10125444	0.93[ASN][1000 genomes]
rs4961671	0.91[ASN][1000 genomes]
rs4961672	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9298749	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892639	chr9:16190403-16242088	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv892640	chr9:16206695-16260837	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16203600-16213600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:16204400-16213600	Weak transcription	Colon Smooth Muscle	Colon
3	chr9:16204600-16213200	Weak transcription	NHLF	lung
4	chr9:16204600-16213600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:16206000-16213600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:16207400-16213600	Weak transcription	Psoas Muscle	Psoas
7	chr9:16207400-16213600	Weak transcription	Right Atrium	heart
8	chr9:16207400-16214400	Weak transcription	Fetal Kidney	kidney
9	chr9:16208000-16213200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr9:16211600-16215200	Enhancers	Fetal Lung	lung
11	chr9:16211600-16216600	Enhancers	Fetal Stomach	stomach
12	chr9:16211800-16212600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:16212000-16212400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr9:16212000-16212400	Enhancers	Stomach Mucosa	stomach
15	chr9:16212200-16212400	Enhancers	Esophagus	oesophagus
16	chr9:16212200-16212400	Enhancers	Lung	lung
17	chr9:16212200-16214200	Enhancers	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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