Variant report

Variant	rs9298749
Chromosome Location	chr9:16214340-16214341
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10119177	0.97[ASN][1000 genomes]
rs10123661	0.94[ASN][1000 genomes]
rs10125444	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12553066	0.96[ASN][1000 genomes]
rs4961671	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4961672	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892639	chr9:16190403-16242088	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv892640	chr9:16206695-16260837	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16207400-16214400	Weak transcription	Fetal Kidney	kidney
2	chr9:16211600-16215200	Enhancers	Fetal Lung	lung
3	chr9:16211600-16216600	Enhancers	Fetal Stomach	stomach
4	chr9:16213200-16214800	Enhancers	Duodenum Smooth Muscle	Duodenum
5	chr9:16213200-16214800	Enhancers	Stomach Smooth Muscle	stomach
6	chr9:16213200-16214800	Enhancers	NHLF	lung
7	chr9:16213200-16215200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:16213200-16215200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr9:16213400-16214600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:16213400-16214800	Enhancers	HSMMtube	muscle
11	chr9:16213400-16214800	Enhancers	Osteobl	bone
12	chr9:16213400-16215000	Enhancers	Stomach Mucosa	stomach
13	chr9:16213400-16215000	Enhancers	NH-A	brain
14	chr9:16213400-16215000	Enhancers	NHDF-Ad	bronchial
15	chr9:16213400-16215400	Enhancers	HSMM	muscle
16	chr9:16213600-16214400	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr9:16213600-16214600	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr9:16213600-16214600	Enhancers	Hela-S3	cervix
19	chr9:16213600-16214800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr9:16213600-16215000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr9:16213600-16215400	Enhancers	Gastric	stomach
22	chr9:16213600-16215400	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr9:16213600-16215400	Enhancers	Small Intestine	intestine
24	chr9:16213600-16215600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr9:16213600-16215800	Enhancers	Rectal Smooth Muscle	rectum
26	chr9:16213600-16216000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr9:16213600-16216200	Enhancers	Fetal Muscle Leg	muscle
28	chr9:16213800-16214600	Enhancers	HUVEC	blood vessel
29	chr9:16213800-16214800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr9:16213800-16215200	Weak transcription	Right Ventricle	heart
31	chr9:16214000-16214400	Enhancers	A549	lung
32	chr9:16214000-16214800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr9:16214000-16214800	Weak transcription	Aorta	Aorta
34	chr9:16214000-16214800	Weak transcription	Fetal Thymus	thymus
35	chr9:16214000-16215000	Weak transcription	Adipose Nuclei	Adipose
36	chr9:16214000-16215200	Enhancers	Colon Smooth Muscle	Colon
37	chr9:16214000-16215200	Weak transcription	Lung	lung
38	chr9:16214200-16214400	Weak transcription	Ovary	ovary
39	chr9:16214200-16214600	Enhancers	Liver	Liver
40	chr9:16214200-16214600	Weak transcription	Fetal Muscle Trunk	muscle
41	chr9:16214200-16214600	Weak transcription	Left Ventricle	heart
42	chr9:16214200-16214600	Weak transcription	Right Atrium	heart
43	chr9:16214200-16215200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr9:16214200-16215400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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