Variant report

Variant	rs12554003
Chromosome Location	chr9:73610288-73610289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12551555	1.00[CEU][hapmap];0.82[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap]
rs12551853	0.87[EUR][1000 genomes]
rs13288445	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13293692	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7045841	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7047569	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71505919	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430072	chr9:73509677-73640530	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73604000-73614800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:73605200-73610600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:73605200-73614000	Weak transcription	Osteobl	bone
4	chr9:73609000-73610400	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr9:73609200-73610800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr9:73609400-73610400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr9:73609600-73610400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:73609600-73611400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:73609800-73611600	Enhancers	NHDF-Ad	bronchial
10	chr9:73610000-73610600	Enhancers	Brain Substantia Nigra	brain
11	chr9:73610000-73614800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr9:73610200-73613800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr9:73610200-73616600	Weak transcription	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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