Variant report

Variant	rs13288445
Chromosome Location	chr9:73619364-73619365
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12551555	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12551853	0.87[EUR][1000 genomes]
rs12551920	0.82[ASN][1000 genomes]
rs12552966	0.89[ASN][1000 genomes]
rs12553795	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12554003	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12554974	0.82[ASN][1000 genomes]
rs12555007	0.82[ASN][1000 genomes]
rs13293692	0.87[EUR][1000 genomes]
rs1831311	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs34483676	0.82[ASN][1000 genomes]
rs35630891	0.82[AFR][1000 genomes]
rs36114654	0.82[AFR][1000 genomes]
rs6560176	0.80[ASN][1000 genomes]
rs7045841	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7047569	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71505919	0.80[AFR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430072	chr9:73509677-73640530	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1042806	chr9:73613885-73686104	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73615000-73620000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:73618800-73619400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:73619000-73619400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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