Variant report

Variant	rs12555245
Chromosome Location	chr9:71860998-71860999
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10156634	1.00[ASN][1000 genomes]
rs10735653	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs10781434	1.00[ASN][1000 genomes]
rs10781435	1.00[ASN][1000 genomes]
rs11791970	1.00[ASN][1000 genomes]
rs12551317	1.00[ASN][1000 genomes]
rs12551566	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12553945	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2498437	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs2993817	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs2993822	1.00[ASN][1000 genomes]
rs3002381	1.00[ASN][1000 genomes]
rs34774441	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41277913	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4567104	1.00[ASN][1000 genomes]
rs4745625	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs4745626	1.00[ASN][1000 genomes]
rs4745627	1.00[ASN][1000 genomes]
rs62567098	1.00[ASN][1000 genomes]
rs62567099	1.00[ASN][1000 genomes]
rs7020849	1.00[ASN][1000 genomes]
rs7875573	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs9411187	1.00[ASN][1000 genomes]
rs9411202	1.00[ASN][1000 genomes]
rs9411203	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051723	chr9:71398713-71971285	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv931684	chr9:71417110-71957723	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1049175	chr9:71418242-71986910	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1035823	chr9:71465139-71901672	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv466396	chr9:71471912-71935577	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv614548	chr9:71471912-71935577	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv1035477	chr9:71511927-71959487	Enhancers Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
8	nsv893416	chr9:71597840-71888601	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
9	nsv817406	chr9:71675454-72179318	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	nsv831610	chr9:71846941-72016835	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71828000-71866000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr9:71828600-71865600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr9:71828800-71874200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr9:71831400-71868000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr9:71831400-71872800	Strong transcription	Liver	Liver
6	chr9:71831600-71863200	Weak transcription	Hela-S3	cervix
7	chr9:71836400-71874000	Weak transcription	Fetal Brain Male	brain
8	chr9:71837400-71863000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:71838000-71861600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr9:71838600-71862200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr9:71839000-71872600	Strong transcription	Fetal Intestine Large	intestine
12	chr9:71839600-71863400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr9:71840200-71870400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr9:71841400-71869800	Weak transcription	Colon Smooth Muscle	Colon
15	chr9:71841400-71869800	Weak transcription	K562	blood
16	chr9:71843000-71862400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:71843400-71861600	Weak transcription	Primary B cells from cord blood	blood
18	chr9:71843400-71868000	Weak transcription	Dnd41	blood
19	chr9:71845200-71872000	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr9:71847000-71868800	Weak transcription	Small Intestine	intestine
21	chr9:71847600-71871200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr9:71847600-71879600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr9:71847800-71867800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr9:71851800-71862400	Weak transcription	Fetal Muscle Leg	muscle
25	chr9:71851800-71870800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr9:71852000-71876800	Weak transcription	Psoas Muscle	Psoas
27	chr9:71852200-71861400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr9:71852200-71862000	Weak transcription	Colonic Mucosa	Colon
29	chr9:71852400-71862400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr9:71852400-71864200	Weak transcription	Stomach Mucosa	stomach
31	chr9:71853000-71861600	Weak transcription	Primary T cells from cord blood	blood
32	chr9:71853000-71862200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr9:71853600-71861600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr9:71853600-71861600	Weak transcription	Brain Angular Gyrus	brain
35	chr9:71853600-71861600	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr9:71853600-71861600	Weak transcription	Rectal Smooth Muscle	rectum
37	chr9:71853600-71862400	Weak transcription	Fetal Thymus	thymus
38	chr9:71853600-71863200	Weak transcription	Brain Anterior Caudate	brain
39	chr9:71853600-71868800	Weak transcription	HSMMtube	muscle
40	chr9:71853800-71862400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr9:71853800-71870800	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr9:71854000-71865800	Weak transcription	NH-A	brain
43	chr9:71854400-71862400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr9:71855000-71861000	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr9:71855200-71863000	Weak transcription	Osteobl	bone
46	chr9:71855400-71864600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr9:71855600-71861400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr9:71855600-71861400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr9:71855600-71861400	Weak transcription	Fetal Kidney	kidney
50	chr9:71855600-71861600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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