Variant report

Variant	rs41277913
Chromosome Location	chr9:71867861-71867862
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:71864548..71866057-chr9:71866161..71868827,2	MCF-7	breast:
2	chr9:71857960..71860439-chr9:71866424..71869302,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10156634	1.00[ASN][1000 genomes]
rs10735653	1.00[ASN][1000 genomes]
rs10781434	1.00[ASN][1000 genomes]
rs10781435	1.00[ASN][1000 genomes]
rs11791970	1.00[ASN][1000 genomes]
rs12551317	1.00[ASN][1000 genomes]
rs12551566	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12553945	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12555245	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2498437	1.00[ASN][1000 genomes]
rs2993817	1.00[ASN][1000 genomes]
rs2993822	1.00[ASN][1000 genomes]
rs3002381	1.00[ASN][1000 genomes]
rs34774441	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4567104	1.00[ASN][1000 genomes]
rs4745625	1.00[ASN][1000 genomes]
rs4745626	1.00[ASN][1000 genomes]
rs4745627	1.00[ASN][1000 genomes]
rs62567098	1.00[ASN][1000 genomes]
rs62567099	1.00[ASN][1000 genomes]
rs7020849	1.00[ASN][1000 genomes]
rs7875573	1.00[ASN][1000 genomes]
rs9411187	1.00[ASN][1000 genomes]
rs9411202	1.00[ASN][1000 genomes]
rs9411203	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051723	chr9:71398713-71971285	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv931684	chr9:71417110-71957723	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1049175	chr9:71418242-71986910	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1035823	chr9:71465139-71901672	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv466396	chr9:71471912-71935577	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv614548	chr9:71471912-71935577	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv1035477	chr9:71511927-71959487	Enhancers Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
8	nsv893416	chr9:71597840-71888601	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
9	nsv817406	chr9:71675454-72179318	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	nsv831610	chr9:71846941-72016835	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
11	esv1796249	chr9:71862129-71911566	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71828800-71874200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr9:71831400-71868000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr9:71831400-71872800	Strong transcription	Liver	Liver
4	chr9:71836400-71874000	Weak transcription	Fetal Brain Male	brain
5	chr9:71839000-71872600	Strong transcription	Fetal Intestine Large	intestine
6	chr9:71840200-71870400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr9:71841400-71869800	Weak transcription	Colon Smooth Muscle	Colon
8	chr9:71841400-71869800	Weak transcription	K562	blood
9	chr9:71843400-71868000	Weak transcription	Dnd41	blood
10	chr9:71845200-71872000	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr9:71847000-71868800	Weak transcription	Small Intestine	intestine
12	chr9:71847600-71871200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr9:71847600-71879600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr9:71851800-71870800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr9:71852000-71876800	Weak transcription	Psoas Muscle	Psoas
16	chr9:71853600-71868800	Weak transcription	HSMMtube	muscle
17	chr9:71853800-71870800	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr9:71857200-71869400	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr9:71858600-71870000	Strong transcription	HepG2	liver
20	chr9:71859000-71870200	Strong transcription	Duodenum Mucosa	Duodenum
21	chr9:71859200-71870400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
22	chr9:71859200-71872200	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr9:71859200-71872600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr9:71859400-71873000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr9:71859600-71872200	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr9:71860000-71870600	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr9:71860400-71869600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr9:71860400-71870000	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr9:71860400-71870200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr9:71860400-71872800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr9:71861000-71869800	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr9:71861000-71870400	Strong transcription	Placenta Amnion	Placenta Amnion
33	chr9:71861200-71869600	Strong transcription	Fetal Intestine Small	intestine
34	chr9:71861200-71870000	Strong transcription	Duodenum Smooth Muscle	Duodenum
35	chr9:71861200-71870600	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr9:71861400-71869600	Strong transcription	Stomach Smooth Muscle	stomach
37	chr9:71861400-71872200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr9:71861600-71868800	Strong transcription	Brain Hippocampus Middle	brain
39	chr9:71861600-71869400	Strong transcription	Aorta	Aorta
40	chr9:71861600-71869400	Strong transcription	Right Ventricle	heart
41	chr9:71861600-71869400	Strong transcription	Sigmoid Colon	Sigmoid Colon
42	chr9:71861600-71869600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr9:71861600-71869600	Strong transcription	Lung	lung
44	chr9:71861600-71869600	Strong transcription	Ovary	ovary
45	chr9:71861600-71869800	Strong transcription	H9 Cell Line	embryonic stem cell
46	chr9:71861600-71870600	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr9:71861600-71872000	Strong transcription	H1 Cell Line	embryonic stem cell
48	chr9:71861800-71869600	Strong transcription	Pancreas	Pancrea
49	chr9:71862200-71869600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr9:71862200-71869800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links