Variant report
| Variant | rs1255747 |
|---|---|
| Chromosome Location | chr14:64032994-64032995 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:64008630..64011700-chr14:64030153..64034050,5 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000154001 | Chromatin interaction |
| ENSG00000261242 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10129182 | 1.00[ASN][1000 genomes] |
| rs10135999 | 1.00[ASN][1000 genomes] |
| rs11158494 | 1.00[ASN][1000 genomes] |
| rs1255724 | 1.00[ASN][1000 genomes] |
| rs1255728 | 1.00[ASN][1000 genomes] |
| rs1255729 | 1.00[ASN][1000 genomes] |
| rs1255734 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1255736 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1255744 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1255745 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1255783 | 1.00[ASN][1000 genomes] |
| rs17101259 | 1.00[ASN][1000 genomes] |
| rs28420069 | 1.00[ASN][1000 genomes] |
| rs28607114 | 1.00[ASN][1000 genomes] |
| rs28708979 | 1.00[ASN][1000 genomes] |
| rs28744493 | 1.00[ASN][1000 genomes] |
| rs61983965 | 1.00[ASN][1000 genomes] |
| rs61995015 | 1.00[ASN][1000 genomes] |
| rs6573515 | 1.00[ASN][1000 genomes] |
| rs7141832 | 1.00[ASN][1000 genomes] |
| rs7150291 | 1.00[ASN][1000 genomes] |
| rs7150490 | 1.00[ASN][1000 genomes] |
| rs7156664 | 1.00[ASN][1000 genomes] |
| rs73278655 | 1.00[ASN][1000 genomes] |
| rs74056132 | 1.00[ASN][1000 genomes] |
| rs74056138 | 1.00[ASN][1000 genomes] |
| rs74056139 | 1.00[ASN][1000 genomes] |
| rs74056141 | 1.00[ASN][1000 genomes] |
| rs8003274 | 1.00[ASN][1000 genomes] |
| rs8005767 | 1.00[ASN][1000 genomes] |
| rs8009130 | 1.00[ASN][1000 genomes] |
| rs8017413 | 1.00[ASN][1000 genomes] |
| rs8021183 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv527251 | chr14:63400786-64068806 | Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv520528 | chr14:63400786-64157117 | Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
| 3 | nsv915909 | chr14:63620440-64560369 | Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 67 gene(s) | inside rSNPs | diseases |
| 4 | nsv974442 | chr14:64024425-64046914 | Enhancers Weak transcription Bivalent Enhancer | TF binding regionChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:64030200-64034800 | Enhancers | Placenta | Placenta |
