Variant report

Variant	rs1255780
Chromosome Location	chr14:63997819-63997820
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10129182	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10135999	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10220496	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11158494	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1255717	0.97[ASN][1000 genomes]
rs1255724	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1255728	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1255729	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1255732	0.88[EUR][1000 genomes]
rs1255754	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1255764	0.81[ASN][1000 genomes]
rs1255773	0.92[ASN][1000 genomes]
rs1255783	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1255784	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1255787	0.97[ASN][1000 genomes]
rs17101259	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28420069	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28607114	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28708979	0.96[EUR][1000 genomes]
rs28744493	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3783737	0.91[ASN][1000 genomes]
rs7150291	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7150490	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7156664	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7158658	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73278655	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs74056132	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs74056138	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs74056139	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs74056141	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8003274	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8009130	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8017413	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8021183	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs964955	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv530774	chr14:63591348-64029881	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63951000-64003200	Weak transcription	Ovary	ovary
2	chr14:63960000-64005000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr14:63960200-64008600	Weak transcription	HSMMtube	muscle
4	chr14:63970200-64008600	Weak transcription	Aorta	Aorta
5	chr14:63971200-64000800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr14:63972000-64000200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:63972200-64003400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr14:63972400-64002800	Weak transcription	HMEC	breast
9	chr14:63972600-64008800	Weak transcription	Esophagus	oesophagus
10	chr14:63974800-64007800	Weak transcription	Fetal Brain Male	brain
11	chr14:63975000-64008800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr14:63975200-64000600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr14:63975600-64005800	Weak transcription	K562	blood
14	chr14:63977200-64002400	Weak transcription	HSMM	muscle
15	chr14:63978400-63999400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr14:63979200-64002600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr14:63980800-64000400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr14:63980800-64008000	Weak transcription	Small Intestine	intestine
19	chr14:63981600-64002800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr14:63981800-64003200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr14:63981800-64004400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr14:63981800-64008000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr14:63982000-64001600	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr14:63982000-64002800	Weak transcription	HUVEC	blood vessel
25	chr14:63983400-64000600	Weak transcription	A549	lung
26	chr14:63983400-64002800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr14:63983600-63999400	Weak transcription	Fetal Brain Female	brain
28	chr14:63983600-64000800	Weak transcription	Osteobl	bone
29	chr14:63983600-64003000	Weak transcription	Hela-S3	cervix
30	chr14:63983600-64003000	Weak transcription	NH-A	brain
31	chr14:63983600-64003200	Weak transcription	NHDF-Ad	bronchial
32	chr14:63984400-64002000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr14:63986400-64000800	Weak transcription	Placenta	Placenta
34	chr14:63987600-64000800	Weak transcription	NHEK	skin
35	chr14:63987800-63999400	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr14:63988400-64002800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr14:63988600-63999400	Weak transcription	Fetal Muscle Leg	muscle
38	chr14:63988800-64008200	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr14:63990000-64008800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr14:63991000-64003200	Weak transcription	Liver	Liver
41	chr14:63991000-64004600	Weak transcription	Colon Smooth Muscle	Colon
42	chr14:63991200-63999400	Weak transcription	HepG2	liver
43	chr14:63991200-64000600	Weak transcription	Adipose Nuclei	Adipose
44	chr14:63991200-64003000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr14:63991200-64003400	Weak transcription	Brain Germinal Matrix	brain
46	chr14:63991200-64006000	Weak transcription	Fetal Kidney	kidney
47	chr14:63991400-64003200	Weak transcription	Stomach Smooth Muscle	stomach
48	chr14:63991400-64007800	Weak transcription	Rectal Smooth Muscle	rectum
49	chr14:63991600-63999400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr14:63991600-63999600	Weak transcription	Right Atrium	heart

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