Variant report

Variant	rs1255732
Chromosome Location	chr14:64017662-64017663
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64011188..64013753-chr14:64017649..64019673,2	K562	blood:
2	chr14:64010795..64013799-chr14:64014716..64019149,4	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10129182	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10135999	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11158494	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1255724	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1255728	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1255729	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1255734	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1255736	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1255754	0.84[EUR][1000 genomes]
rs1255780	0.88[EUR][1000 genomes]
rs1255783	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1255784	0.86[EUR][1000 genomes]
rs17101259	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28420069	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28607114	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28708979	0.87[EUR][1000 genomes]
rs28744493	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7150291	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7150490	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7156664	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7158658	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73278655	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs74056132	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs74056138	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs74056139	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs74056141	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8003274	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8009130	0.84[EUR][1000 genomes]
rs8017413	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8021183	0.89[EUR][1000 genomes]
rs964955	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv530774	chr14:63591348-64029881	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64011000-64021600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:64011600-64018000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr14:64011800-64018000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr14:64012000-64018200	Weak transcription	A549	lung
5	chr14:64012200-64017800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr14:64015200-64018200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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