Variant report

Variant	rs12563911
Chromosome Location	chr1:217308054-217308055
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:217308030..217310144-chr1:217311163..217313790,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12144074	1.00[AFR][1000 genomes]
rs56197827	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58317559	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60382057	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60478253	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72743335	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72743338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217307200-217311600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
2	chr1:217307200-217314200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr1:217307200-217314200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr1:217307400-217308400	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
5	chr1:217307400-217308600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr1:217307400-217308600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:217307400-217310200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr1:217307400-217311000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:217307400-217314200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
10	chr1:217307600-217308200	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:217307600-217308200	Active TSS	Muscle Satellite Cultured Cells	--
12	chr1:217307600-217308200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr1:217307600-217308200	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
14	chr1:217307600-217308400	Bivalent Enhancer	Liver	Liver
15	chr1:217307600-217308400	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
16	chr1:217307600-217308400	Flanking Active TSS	Fetal Heart	heart
17	chr1:217307600-217308400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
18	chr1:217307600-217308600	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr1:217307600-217308600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
20	chr1:217307600-217308800	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr1:217307600-217308800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:217307600-217309000	Bivalent Enhancer	Placenta	Placenta
23	chr1:217307600-217309200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr1:217307600-217309200	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
25	chr1:217307600-217309200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
26	chr1:217307600-217309600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr1:217307600-217309600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
28	chr1:217307600-217309600	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
29	chr1:217307600-217310200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr1:217307600-217311200	Active TSS	Right Ventricle	heart
31	chr1:217307600-217311800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
32	chr1:217307800-217308200	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
33	chr1:217307800-217308200	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr1:217307800-217308200	Flanking Bivalent TSS/Enh	Brain Angular Gyrus	brain
35	chr1:217307800-217308200	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
36	chr1:217307800-217308200	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
37	chr1:217307800-217308200	Bivalent Enhancer	Fetal Brain Male	brain
38	chr1:217307800-217308200	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
39	chr1:217307800-217308200	Bivalent Enhancer	Stomach Mucosa	stomach
40	chr1:217307800-217308400	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
41	chr1:217307800-217308400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
42	chr1:217307800-217308400	Flanking Bivalent TSS/Enh	NH-A	brain
43	chr1:217307800-217308600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr1:217307800-217308600	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
45	chr1:217307800-217308600	Bivalent Enhancer	Ovary	ovary
46	chr1:217307800-217308800	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
47	chr1:217307800-217309000	Bivalent Enhancer	Lung	lung
48	chr1:217307800-217309200	Active TSS	Aorta	Aorta
49	chr1:217307800-217309200	Active TSS	Gastric	stomach
50	chr1:217307800-217309400	Active TSS	Left Ventricle	heart

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