Variant report

Variant	rs12564968
Chromosome Location	chr1:210980282-210980283
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10465689	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10465690	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11119591	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11119592	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11119604	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1122901	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12117136	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12122556	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12122589	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12122593	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12122869	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12134429	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12134632	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12137464	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12139273	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12139474	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12143524	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12566698	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1340124	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1340125	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1934612	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1934613	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1934614	0.83[EUR][1000 genomes]
rs2185384	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2884382	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4951462	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4951605	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55809603	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs55921530	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs56264689	0.82[EUR][1000 genomes]
rs56383511	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61829490	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61829492	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61829493	0.82[EUR][1000 genomes]
rs61829496	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61829499	0.83[EUR][1000 genomes]
rs6694502	0.83[EUR][1000 genomes]
rs73069563	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73069564	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73069573	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73069579	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7519357	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7532333	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7532949	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7541814	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873153	chr1:210900481-210994339	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv999018	chr1:210907239-210999306	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210967400-210985000	Weak transcription	Brain Hippocampus Middle	brain
2	chr1:210975000-210981200	Weak transcription	HSMMtube	muscle
3	chr1:210975200-210981400	Weak transcription	Brain Angular Gyrus	brain
4	chr1:210977600-210993200	Weak transcription	HSMM	muscle

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