Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10465689	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.90[ASN][1000 genomes]
rs10465690	0.90[ASN][1000 genomes]
rs11119604	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11119610	0.91[EUR][1000 genomes]
rs12117136	1.00[JPT][hapmap]
rs12122965	1.00[JPT][hapmap]
rs12129155	1.00[JPT][hapmap]
rs12134429	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12134632	0.90[ASN][1000 genomes]
rs12564968	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12566698	0.90[ASN][1000 genomes]
rs1934612	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1934613	1.00[JPT][hapmap]
rs1970589	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs2884382	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4113643	1.00[JPT][hapmap]
rs4951462	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4951605	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs55809603	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55921530	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6689950	0.83[EUR][1000 genomes]
rs73069563	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs73069564	0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs73069573	0.90[ASN][1000 genomes]
rs73069579	0.81[ASN][1000 genomes]
rs7532333	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873153	chr1:210900481-210994339	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv999018	chr1:210907239-210999306	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7532949	DTL	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210967400-210985000	Weak transcription	Brain Hippocampus Middle	brain
2	chr1:210977600-210993200	Weak transcription	HSMM	muscle

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