Variant report

Variant	rs4113643
Chromosome Location	chr1:211009921-211009922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10465689	1.00[JPT][hapmap]
rs11119604	1.00[JPT][hapmap]
rs12117136	1.00[JPT][hapmap]
rs12122965	1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.85[ASN][1000 genomes]
rs12129155	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12134429	1.00[JPT][hapmap]
rs12564329	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12566900	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1934612	1.00[JPT][hapmap]
rs1934613	1.00[JPT][hapmap]
rs2884382	1.00[JPT][hapmap]
rs35223020	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951462	1.00[JPT][hapmap]
rs4951605	1.00[JPT][hapmap]
rs6678768	0.85[ASN][1000 genomes]
rs72757548	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7532333	1.00[JPT][hapmap]
rs7532949	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4113643	RCOR3	cis	parietal	SCAN
rs4113643	NUCKS1	cis	parietal	SCAN
rs4113643	FAM71A	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210996600-211015000	Weak transcription	Brain Hippocampus Middle	brain
2	chr1:211005200-211014200	Weak transcription	HSMMtube	muscle
3	chr1:211009800-211010600	ZNF genes & repeats	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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