Variant report

Variant	rs12122965
Chromosome Location	chr1:211047777-211047778
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10465689	1.00[JPT][hapmap]
rs11119604	1.00[JPT][hapmap]
rs12117136	1.00[JPT][hapmap]
rs12129155	0.91[CEU][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12134429	1.00[JPT][hapmap]
rs12564329	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12566900	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1934612	1.00[JPT][hapmap]
rs1934613	1.00[JPT][hapmap]
rs2884382	1.00[JPT][hapmap]
rs35223020	0.85[ASN][1000 genomes]
rs4113643	1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.85[ASN][1000 genomes]
rs4951462	1.00[JPT][hapmap]
rs4951605	1.00[JPT][hapmap]
rs6678768	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72757548	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7532333	1.00[JPT][hapmap]
rs7532949	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv4398	chr1:211034582-211079117	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12122965	CAMK1G	cis	cerebellum	SCAN
rs12122965	ATF3	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211036000-211054800	Weak transcription	HSMM	muscle
2	chr1:211047400-211048000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr1:211047400-211048200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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