Variant report

Variant	rs12564329
Chromosome Location	chr1:211025846-211025847
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12122965	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12129155	1.00[ASN][1000 genomes]
rs12566900	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35223020	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4113643	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6678768	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72757548	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv520509	chr1:211021787-211041590	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211022600-211027200	Enhancers	Brain Substantia Nigra	brain
2	chr1:211023000-211027000	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr1:211023400-211026200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:211023400-211026800	Enhancers	Brain Angular Gyrus	brain
5	chr1:211023400-211027000	Enhancers	Brain Anterior Caudate	brain
6	chr1:211024800-211026800	Enhancers	Brain Hippocampus Middle	brain
7	chr1:211024800-211027000	Enhancers	Brain Cingulate Gyrus	brain
8	chr1:211024800-211035400	Weak transcription	HSMM	muscle
9	chr1:211024800-211046800	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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