Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12123293	0.92[CHB][hapmap]
rs12142954	0.96[ASN][1000 genomes]
rs12562303	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12562536	0.92[JPT][hapmap]
rs12563193	1.00[JPT][hapmap]
rs12565452	1.00[JPT][hapmap]
rs1538755	0.90[JPT][hapmap]
rs17016821	0.92[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs1934614	0.92[CHB][hapmap];0.82[JPT][hapmap];0.80[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2884382	0.84[EUR][1000 genomes]
rs4951563	0.92[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs4951566	0.92[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs4951576	1.00[JPT][hapmap]
rs4951591	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs55809603	0.84[EUR][1000 genomes]
rs55921530	0.84[EUR][1000 genomes]
rs56264689	0.94[ASN][1000 genomes]
rs57144255	0.80[ASN][1000 genomes]
rs59441822	0.80[ASN][1000 genomes]
rs59843981	0.82[ASN][1000 genomes]
rs61829493	0.98[ASN][1000 genomes]
rs61829499	0.80[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6689950	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6694502	0.92[CHB][hapmap];0.82[JPT][hapmap];0.80[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7532949	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs9430047	1.00[JPT][hapmap]
rs9430049	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873153	chr1:210900481-210994339	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv999018	chr1:210907239-210999306	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210938600-210943800	Weak transcription	HSMM	muscle
2	chr1:210941800-210978000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:210943000-210945400	Enhancers	HSMMtube	muscle
4	chr1:210943000-210952800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr1:210943200-210944200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:210943200-210944400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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