Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12123293	0.93[CHB][hapmap];0.96[CHD][hapmap];0.87[ASN][1000 genomes]
rs12142954	0.91[ASN][1000 genomes]
rs12562303	0.91[JPT][hapmap]
rs12562536	1.00[JPT][hapmap]
rs12563193	1.00[JPT][hapmap]
rs12565452	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs12566234	0.83[ASN][1000 genomes]
rs1538755	0.81[CHD][hapmap];1.00[JPT][hapmap]
rs17016775	0.81[CHD][hapmap]
rs17016821	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.85[YRI][hapmap];0.95[ASN][1000 genomes]
rs1934614	0.85[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs1953951	0.81[CHD][hapmap]
rs1970589	0.92[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs4951563	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951576	0.91[JPT][hapmap]
rs4951591	0.91[JPT][hapmap]
rs56264689	0.89[ASN][1000 genomes]
rs61829493	0.92[ASN][1000 genomes]
rs61829499	0.83[ASN][1000 genomes]
rs6689950	0.80[ASN][1000 genomes]
rs6694502	0.85[CHB][hapmap];0.89[CHD][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs74156059	0.81[ASN][1000 genomes]
rs74156061	0.81[ASN][1000 genomes]
rs74156063	0.83[ASN][1000 genomes]
rs74156064	0.83[ASN][1000 genomes]
rs9430047	0.85[CHD][hapmap];0.91[JPT][hapmap]
rs9430049	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873153	chr1:210900481-210994339	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv999018	chr1:210907239-210999306	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210871200-210932000	Weak transcription	HSMM	muscle
2	chr1:210917400-210930800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:210919800-210928600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:210920800-210928200	Weak transcription	Esophagus	oesophagus
5	chr1:210921600-210931400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:210923800-210928600	Weak transcription	HSMMtube	muscle
7	chr1:210924600-210928200	Weak transcription	Brain Anterior Caudate	brain
8	chr1:210925200-210926000	Enhancers	Placenta Amnion	Placenta Amnion
9	chr1:210925400-210928200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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