Variant report

Variant	rs4951576
Chromosome Location	chr1:210935128-210935129
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12142954	0.80[ASN][1000 genomes]
rs12354080	1.00[YRI][hapmap]
rs12562303	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12562536	1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12563193	0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12565452	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12566234	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1538755	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17016821	0.91[JPT][hapmap]
rs1934614	0.83[JPT][hapmap]
rs1970589	1.00[JPT][hapmap]
rs2022442	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4951563	0.91[JPT][hapmap]
rs4951566	0.91[JPT][hapmap]
rs4951591	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs55723924	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56849437	0.93[ASN][1000 genomes]
rs57144255	0.96[ASN][1000 genomes]
rs59441822	0.96[ASN][1000 genomes]
rs59843981	0.97[ASN][1000 genomes]
rs6694502	0.83[JPT][hapmap]
rs74156047	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs74156059	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74156061	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74156063	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74156064	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9430047	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9430049	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873153	chr1:210900481-210994339	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv999018	chr1:210907239-210999306	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210932200-210935600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:210932800-210937200	Weak transcription	HSMM	muscle
3	chr1:210933600-210937800	Weak transcription	HSMMtube	muscle

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