Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12562303	0.91[ASN][1000 genomes]
rs12562536	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12563193	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12565452	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12566234	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1538755	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17016821	0.81[ASN][1000 genomes]
rs2022442	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4951563	0.81[ASN][1000 genomes]
rs4951566	0.81[ASN][1000 genomes]
rs4951576	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4951591	0.91[ASN][1000 genomes]
rs55723924	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56849437	0.88[ASN][1000 genomes]
rs57144255	0.88[ASN][1000 genomes]
rs59441822	0.91[ASN][1000 genomes]
rs59843981	0.89[ASN][1000 genomes]
rs74156047	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74156059	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74156063	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74156064	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9430047	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9430049	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873153	chr1:210900481-210994339	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv999018	chr1:210907239-210999306	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210871200-210932000	Weak transcription	HSMM	muscle
2	chr1:210903800-210919200	Weak transcription	HSMMtube	muscle
3	chr1:210905600-210921200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr1:210910600-210921200	Weak transcription	Brain Angular Gyrus	brain
5	chr1:210917400-210930800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search: