Variant report

Variant	rs1538755
Chromosome Location	chr1:210893875-210893876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12123293	0.81[CHD][hapmap]
rs12562303	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs12562536	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12563193	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12565452	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12566234	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17016821	0.82[CHD][hapmap];1.00[JPT][hapmap]
rs1934614	0.92[JPT][hapmap]
rs1970589	0.90[JPT][hapmap]
rs2022442	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4951563	0.82[CHD][hapmap];1.00[JPT][hapmap]
rs4951566	0.81[CHD][hapmap];1.00[JPT][hapmap]
rs4951576	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4951591	0.83[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes]
rs55723924	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6694502	0.92[JPT][hapmap]
rs74156043	0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs74156047	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74156059	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74156061	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74156063	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs74156064	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9430047	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9430049	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1538755	CD247	trans	brain	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210871200-210932000	Weak transcription	HSMM	muscle
2	chr1:210881800-210901200	Weak transcription	Brain Angular Gyrus	brain
3	chr1:210889200-210903200	Weak transcription	HSMMtube	muscle

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