Variant report

Variant	rs4951591
Chromosome Location	chr1:210953231-210953232
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12142954	0.81[ASN][1000 genomes]
rs12562303	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12562536	0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12563193	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12565452	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12566234	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1538755	0.83[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes]
rs17016821	0.91[JPT][hapmap]
rs17016993	0.83[EUR][1000 genomes]
rs1934614	0.83[JPT][hapmap]
rs1970589	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2022442	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4951563	0.91[JPT][hapmap]
rs4951566	0.91[JPT][hapmap]
rs4951576	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs55723924	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs56849437	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57144255	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58371160	0.91[EUR][1000 genomes]
rs59441822	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59843981	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60698984	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61829493	0.83[ASN][1000 genomes]
rs6694502	0.83[JPT][hapmap]
rs73069566	0.91[EUR][1000 genomes]
rs74156047	0.85[AMR][1000 genomes]
rs74156059	0.91[ASN][1000 genomes]
rs74156061	0.91[ASN][1000 genomes]
rs74156063	0.93[ASN][1000 genomes]
rs74156064	0.93[ASN][1000 genomes]
rs74156835	0.83[EUR][1000 genomes]
rs7517580	0.83[EUR][1000 genomes]
rs7520112	0.83[EUR][1000 genomes]
rs9430047	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9430049	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873153	chr1:210900481-210994339	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv999018	chr1:210907239-210999306	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210941800-210978000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:210944400-210965800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr1:210945000-210954800	Weak transcription	Brain Hippocampus Middle	brain
4	chr1:210946800-210965800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:210949600-210954600	Weak transcription	HSMMtube	muscle
6	chr1:210949800-210954800	Weak transcription	HSMM	muscle
7	chr1:210952800-210953400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr1:210952800-210953400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:210953000-210953400	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links