Variant report

Variant	rs7517580
Chromosome Location	chr1:211004417-211004418
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1125262	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12562303	0.83[EUR][1000 genomes]
rs1343144	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1604372	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17016993	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4325201	0.84[EUR][1000 genomes]
rs4504958	0.88[ASN][1000 genomes]
rs4634969	0.84[EUR][1000 genomes]
rs4951486	0.86[ASN][1000 genomes]
rs4951591	0.83[EUR][1000 genomes]
rs4951668	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4951679	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55717804	0.82[ASN][1000 genomes]
rs56144254	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56849437	0.83[EUR][1000 genomes]
rs57144255	0.83[EUR][1000 genomes]
rs57449301	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs58371160	0.92[EUR][1000 genomes]
rs59441822	0.83[EUR][1000 genomes]
rs59843981	0.83[EUR][1000 genomes]
rs60645773	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60698984	0.92[EUR][1000 genomes]
rs60927621	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6699321	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73069566	0.92[EUR][1000 genomes]
rs74156835	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs74156840	0.98[ASN][1000 genomes]
rs74156847	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs74156848	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7520112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9661403	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210996600-211015000	Weak transcription	Brain Hippocampus Middle	brain
2	chr1:211002400-211004600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:211002600-211004800	Weak transcription	HSMMtube	muscle
4	chr1:211004400-211005200	Genic enhancers	HSMM	muscle

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