Variant report

Variant	rs4504958
Chromosome Location	chr1:211032390-211032391
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1125262	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1343144	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1604372	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17016993	0.92[ASN][1000 genomes]
rs17017026	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4245747	0.81[ASN][1000 genomes]
rs4325201	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4634969	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4951486	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4951668	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4951679	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55717804	0.93[ASN][1000 genomes]
rs55993725	0.80[ASN][1000 genomes]
rs56144254	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57449301	0.92[ASN][1000 genomes]
rs58371160	0.82[EUR][1000 genomes]
rs60645773	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60698984	0.82[EUR][1000 genomes]
rs60927621	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6699321	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73069566	0.82[EUR][1000 genomes]
rs74156835	0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs74156840	0.90[ASN][1000 genomes]
rs74156847	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74156848	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7517580	0.88[ASN][1000 genomes]
rs7520112	0.93[ASN][1000 genomes]
rs9661403	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv520509	chr1:211021787-211041590	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv945275	chr1:211031192-211034638	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211024800-211035400	Weak transcription	HSMM	muscle
2	chr1:211024800-211046800	Weak transcription	HSMMtube	muscle
3	chr1:211027000-211035400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:211029800-211032600	Enhancers	Brain Cingulate Gyrus	brain
5	chr1:211031400-211035400	Weak transcription	Brain Anterior Caudate	brain
6	chr1:211032000-211033000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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