Variant report

Variant	rs60927621
Chromosome Location	chr1:211026310-211026311
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:210545117..210548086-chr1:211025164..211027097,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000200972	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1125262	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1343144	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1604372	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17016993	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17017025	0.84[EUR][1000 genomes]
rs17017030	0.84[EUR][1000 genomes]
rs17017032	0.84[EUR][1000 genomes]
rs4245747	0.80[ASN][1000 genomes]
rs4325201	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4504958	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4634969	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4951486	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4951668	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4951679	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55717804	0.92[ASN][1000 genomes]
rs55993725	0.81[ASN][1000 genomes]
rs56054671	0.84[EUR][1000 genomes]
rs56144254	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57449301	0.93[ASN][1000 genomes]
rs60645773	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6699321	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74156835	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74156840	0.92[ASN][1000 genomes]
rs74156847	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74156848	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7517580	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7520112	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9661403	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv520509	chr1:211021787-211041590	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211022600-211027200	Enhancers	Brain Substantia Nigra	brain
2	chr1:211023000-211027000	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr1:211023400-211026800	Enhancers	Brain Angular Gyrus	brain
4	chr1:211023400-211027000	Enhancers	Brain Anterior Caudate	brain
5	chr1:211024800-211026800	Enhancers	Brain Hippocampus Middle	brain
6	chr1:211024800-211027000	Enhancers	Brain Cingulate Gyrus	brain
7	chr1:211024800-211035400	Weak transcription	HSMM	muscle
8	chr1:211024800-211046800	Weak transcription	HSMMtube	muscle
9	chr1:211026200-211029800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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