Variant report

Variant	rs1125262
Chromosome Location	chr1:211057186-211057187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211053499..211055688-chr1:211056595..211058715,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1343144	0.93[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1604372	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17016993	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17017025	0.85[MEX][hapmap];0.84[EUR][1000 genomes]
rs17017030	0.84[EUR][1000 genomes]
rs17017032	0.85[MEX][hapmap];0.84[EUR][1000 genomes]
rs4325201	1.00[EUR][1000 genomes]
rs4504958	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4634969	1.00[EUR][1000 genomes]
rs4951486	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4951668	0.93[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4951679	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55717804	0.85[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs56054671	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56144254	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57449301	0.85[ASN][1000 genomes]
rs60645773	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60927621	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6699321	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74156835	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs74156840	0.86[ASN][1000 genomes]
rs74156847	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74156848	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7517580	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7520112	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9430047	0.90[GIH][hapmap]
rs9661403	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv4398	chr1:211034582-211079117	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211055200-211058400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:211055600-211057200	Enhancers	HMEC	breast
3	chr1:211055600-211057400	Enhancers	NHEK	skin
4	chr1:211055600-211057800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:211055600-211058200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr1:211055600-211058200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:211056000-211057800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr1:211056200-211058400	Enhancers	HSMMtube	muscle
9	chr1:211056400-211057600	Enhancers	Brain Angular Gyrus	brain
10	chr1:211056400-211057600	Enhancers	Brain Hippocampus Middle	brain
11	chr1:211056400-211057600	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr1:211056600-211057400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr1:211056600-211057600	Enhancers	Brain Substantia Nigra	brain
14	chr1:211056600-211057800	Enhancers	Brain Anterior Caudate	brain
15	chr1:211056600-211057800	Enhancers	A549	lung
16	chr1:211056800-211057800	Enhancers	Osteobl	bone
17	chr1:211056800-211058000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr1:211056800-211058000	Enhancers	Muscle Satellite Cultured Cells	--
19	chr1:211056800-211058000	Enhancers	NH-A	brain
20	chr1:211056800-211058600	Genic enhancers	HSMM	muscle
21	chr1:211056800-211078800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr1:211057000-211057800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:211057000-211058000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links