Variant report

Variant	rs56144254
Chromosome Location	chr1:211061925-211061926
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1125262	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1343144	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1604372	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17016993	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17017025	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17017026	0.84[AMR][1000 genomes]
rs17017030	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17017032	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4325201	1.00[EUR][1000 genomes]
rs4504958	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4634969	1.00[EUR][1000 genomes]
rs4951486	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4951668	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4951679	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55717804	0.86[ASN][1000 genomes]
rs56054671	0.84[EUR][1000 genomes]
rs57449301	0.83[ASN][1000 genomes]
rs60645773	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60927621	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6699321	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74156835	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs74156840	0.84[ASN][1000 genomes]
rs74156847	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs74156848	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7517580	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7520112	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9661403	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv4398	chr1:211034582-211079117	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv873154	chr1:211057697-211117197	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211056800-211078800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:211058400-211077400	Weak transcription	HSMMtube	muscle
3	chr1:211058600-211067200	Weak transcription	HSMM	muscle

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