Variant report

Variant	rs12569928
Chromosome Location	chr10:4801314-4801315
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12571673	0.88[ASN][1000 genomes]
rs17133569	0.88[ASN][1000 genomes]
rs17133582	0.88[ASN][1000 genomes]
rs58389340	0.88[ASN][1000 genomes]
rs72768262	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv549880	chr10:4781029-4810561	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv5620	chr10:4787958-4814661	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4798200-4802600	Weak transcription	HUVEC	blood vessel
2	chr10:4798200-4803000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:4798400-4803400	Weak transcription	NHLF	lung
4	chr10:4799800-4801400	Enhancers	HSMM	muscle
5	chr10:4800000-4801600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr10:4800000-4802600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:4800400-4802800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:4800400-4804400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:4800600-4805400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:4800600-4805600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:4800800-4801800	Weak transcription	NHDF-Ad	bronchial
12	chr10:4800800-4802800	Weak transcription	HMEC	breast
13	chr10:4800800-4805800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:4801000-4805000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:4801200-4801800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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