Variant report

Variant	rs58389340
Chromosome Location	chr10:4806512-4806513
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:4703565..4707087-chr10:4805209..4809008,5	MCF-7	breast:
2	chr10:3824350..3829771-chr10:4804720..4812479,10	MCF-7	breast:
3	chr10:4776186..4778404-chr10:4806346..4808208,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AKR1C2-3	chr10:4806497-4808130	NONHSAT011114

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12569928	0.88[ASN][1000 genomes]
rs12571673	1.00[ASN][1000 genomes]
rs17133569	1.00[ASN][1000 genomes]
rs17133582	1.00[ASN][1000 genomes]
rs72766385	0.84[ASN][1000 genomes]
rs72768252	0.92[ASN][1000 genomes]
rs72768262	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv549880	chr10:4781029-4810561	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv5620	chr10:4787958-4814661	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4804600-4806800	Flanking Active TSS	NHDF-Ad	bronchial
2	chr10:4804800-4806800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:4805400-4806600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:4805400-4809600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:4805600-4806600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:4805600-4810800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:4805600-4811600	Enhancers	Osteobl	bone
8	chr10:4805800-4806600	Enhancers	HSMMtube	muscle
9	chr10:4805800-4806800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:4805800-4806800	Enhancers	Stomach Mucosa	stomach
11	chr10:4805800-4807000	Enhancers	Fetal Heart	heart
12	chr10:4805800-4809600	Weak transcription	Brain Germinal Matrix	brain
13	chr10:4805800-4810000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:4806000-4806800	Enhancers	Right Atrium	heart
15	chr10:4806000-4806800	Enhancers	A549	lung
16	chr10:4806200-4807000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr10:4806200-4807200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:4806200-4807200	Enhancers	NHEK	skin
19	chr10:4806200-4808200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:4806200-4808800	Weak transcription	Aorta	Aorta
21	chr10:4806200-4809800	Weak transcription	Left Ventricle	heart
22	chr10:4806200-4811200	Enhancers	NHLF	lung
23	chr10:4806200-4811400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:4806200-4813400	Enhancers	HUVEC	blood vessel
25	chr10:4806200-4822800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr10:4806400-4806600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
27	chr10:4806400-4806600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr10:4806400-4806600	Flanking Active TSS	HMEC	breast
29	chr10:4806400-4810600	Enhancers	NH-A	brain
30	chr10:4806400-4811400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr10:4806400-4813200	Enhancers	HSMM	muscle

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