Variant report

Variant	rs12570676
Chromosome Location	chr10:97298468-97298469
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97298258..97302790-chr10:97302901..97306757,8	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4244317	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97280800-97301400	Enhancers	Fetal Heart	heart
2	chr10:97282200-97304400	Weak transcription	Brain Germinal Matrix	brain
3	chr10:97289200-97299200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr10:97289200-97309000	Enhancers	Left Ventricle	heart
5	chr10:97289400-97303800	Weak transcription	HSMM	muscle
6	chr10:97290000-97298600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr10:97290000-97301400	Enhancers	Rectal Smooth Muscle	rectum
8	chr10:97290400-97298800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr10:97290600-97301800	Weak transcription	Ovary	ovary
10	chr10:97291200-97301000	Weak transcription	Fetal Brain Female	brain
11	chr10:97291800-97308600	Enhancers	Colon Smooth Muscle	Colon
12	chr10:97292200-97299600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:97292400-97298600	Enhancers	K562	blood
14	chr10:97292600-97299800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:97292600-97299800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:97292600-97300600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr10:97293000-97298800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr10:97293000-97299600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr10:97293000-97299800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr10:97293000-97300400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr10:97293200-97302800	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr10:97293400-97305400	Enhancers	Right Atrium	heart
23	chr10:97293400-97306000	Enhancers	Fetal Intestine Large	intestine
24	chr10:97293600-97299800	Weak transcription	Fetal Muscle Trunk	muscle
25	chr10:97293600-97302000	Weak transcription	Adipose Nuclei	Adipose
26	chr10:97294400-97299200	Enhancers	Fetal Lung	lung
27	chr10:97295000-97299400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr10:97295000-97305200	Enhancers	Stomach Mucosa	stomach
29	chr10:97295800-97299000	Enhancers	HepG2	liver
30	chr10:97296000-97299800	Weak transcription	Small Intestine	intestine
31	chr10:97296200-97299400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr10:97296200-97301400	Weak transcription	Colonic Mucosa	Colon
33	chr10:97296200-97306400	Enhancers	Liver	Liver
34	chr10:97296400-97299000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr10:97296400-97302400	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr10:97296400-97311400	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr10:97296600-97299400	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr10:97296600-97302800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr10:97296800-97312600	Weak transcription	Placenta	Placenta
40	chr10:97297000-97302600	Weak transcription	HSMMtube	muscle
41	chr10:97297200-97299200	Genic enhancers	Stomach Smooth Muscle	stomach
42	chr10:97297200-97299800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr10:97297200-97300400	Weak transcription	Spleen	Spleen
44	chr10:97297200-97301400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr10:97297200-97302800	Weak transcription	Fetal Brain Male	brain
46	chr10:97297400-97299000	Genic enhancers	Fetal Stomach	stomach
47	chr10:97297400-97299600	Weak transcription	Brain Angular Gyrus	brain
48	chr10:97297600-97299200	Weak transcription	Brain Substantia Nigra	brain
49	chr10:97297600-97299600	Weak transcription	Brain Cingulate Gyrus	brain
50	chr10:97297600-97300200	Genic enhancers	Aorta	Aorta

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