Variant report

Variant	rs12572119
Chromosome Location	chr10:118952414-118952415
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr10:118952339-118952527	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
KCNK18	TF binding region

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs17095818	1.00[EUR][1000 genomes]
rs17095821	0.92[EUR][1000 genomes]
rs17095824	0.96[EUR][1000 genomes]
rs17095831	0.96[EUR][1000 genomes]
rs17095832	0.96[EUR][1000 genomes]
rs17095848	0.96[EUR][1000 genomes]
rs17095891	0.96[EUR][1000 genomes]
rs17095893	0.96[EUR][1000 genomes]
rs2420311	0.96[EUR][1000 genomes]
rs3026039	0.96[EUR][1000 genomes]
rs363306	0.96[EUR][1000 genomes]
rs363307	0.96[EUR][1000 genomes]
rs363313	0.86[EUR][1000 genomes]
rs363315	0.96[EUR][1000 genomes]
rs363344	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs363351	0.96[EUR][1000 genomes]
rs363352	0.96[EUR][1000 genomes]
rs363354	0.96[EUR][1000 genomes]
rs363362	0.89[EUR][1000 genomes]
rs3847481	0.96[EUR][1000 genomes]
rs3847482	0.96[EUR][1000 genomes]
rs3847483	0.96[EUR][1000 genomes]
rs3847484	0.96[EUR][1000 genomes]
rs3858328	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3858329	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3858331	0.92[EUR][1000 genomes]
rs3858335	0.96[EUR][1000 genomes]
rs41529744	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56830166	0.89[EUR][1000 genomes]
rs56866787	0.96[EUR][1000 genomes]
rs57142493	0.96[EUR][1000 genomes]
rs57262314	0.96[EUR][1000 genomes]
rs58122384	0.96[EUR][1000 genomes]
rs58555599	0.96[EUR][1000 genomes]
rs59578980	1.00[EUR][1000 genomes]
rs59833995	0.96[EUR][1000 genomes]
rs60085909	0.96[EUR][1000 genomes]
rs60088429	0.89[EUR][1000 genomes]
rs60805690	0.96[EUR][1000 genomes]
rs61332182	0.96[EUR][1000 genomes]
rs61680075	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv896038	chr10:118917671-119002667	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
3	nsv948197	chr10:118952172-118956180	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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