Variant report

Variant	rs41529744
Chromosome Location	chr10:118951289-118951290
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs12571226	1.00[CEU][hapmap]
rs12572119	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17095818	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17095821	1.00[CEU][hapmap];0.83[GIH][hapmap];0.95[LWK][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs17095824	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs17095831	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs17095832	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs17095848	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs17095891	0.96[EUR][1000 genomes]
rs17095893	0.96[EUR][1000 genomes]
rs17095936	1.00[CEU][hapmap]
rs17095973	1.00[CEU][hapmap]
rs2420311	0.96[EUR][1000 genomes]
rs2619098	1.00[CEU][hapmap]
rs3026039	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs363306	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs363307	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs363313	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs363315	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs363322	1.00[CEU][hapmap]
rs363344	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs363351	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs363352	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs363354	0.96[EUR][1000 genomes]
rs363362	0.89[EUR][1000 genomes]
rs363405	1.00[CEU][hapmap]
rs3753127	1.00[CEU][hapmap]
rs3847481	0.96[EUR][1000 genomes]
rs3847482	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs3847483	1.00[CEU][hapmap];0.83[GIH][hapmap];0.95[LWK][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs3847484	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs3858328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3858329	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3858331	1.00[CEU][hapmap];0.83[GIH][hapmap];0.95[LWK][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs3858335	0.96[EUR][1000 genomes]
rs56830166	0.89[EUR][1000 genomes]
rs56866787	0.96[EUR][1000 genomes]
rs57142493	0.96[EUR][1000 genomes]
rs57262314	0.96[EUR][1000 genomes]
rs58122384	0.96[EUR][1000 genomes]
rs58555599	0.96[EUR][1000 genomes]
rs59578980	1.00[EUR][1000 genomes]
rs59833995	0.96[EUR][1000 genomes]
rs60085909	0.96[EUR][1000 genomes]
rs60088429	0.89[EUR][1000 genomes]
rs60805690	0.96[EUR][1000 genomes]
rs61332182	0.96[EUR][1000 genomes]
rs61680075	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv896038	chr10:118917671-119002667	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118937200-118951800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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