Variant report

Variant	rs3753127
Chromosome Location	chr10:119009912-119009913
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:119008981..119011778-chr10:119017026..119018993,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs12571226	1.00[CEU][hapmap]
rs17095818	1.00[CEU][hapmap]
rs17095821	1.00[CEU][hapmap]
rs17095824	1.00[CEU][hapmap]
rs17095831	1.00[CEU][hapmap]
rs17095832	1.00[CEU][hapmap]
rs17095848	1.00[CEU][hapmap]
rs17095936	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17095973	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2532791	1.00[TSI][hapmap]
rs2532802	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2619098	1.00[CEU][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs2619099	0.92[EUR][1000 genomes]
rs2619101	0.92[EUR][1000 genomes]
rs28634565	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3026039	1.00[CEU][hapmap]
rs363232	1.00[MEX][hapmap]
rs363270	1.00[TSI][hapmap]
rs363293	1.00[TSI][hapmap]
rs363302	1.00[TSI][hapmap]
rs363306	1.00[CEU][hapmap]
rs363307	1.00[CEU][hapmap]
rs363313	1.00[CEU][hapmap]
rs363315	1.00[CEU][hapmap]
rs363318	0.92[EUR][1000 genomes]
rs363319	0.92[EUR][1000 genomes]
rs363320	0.92[EUR][1000 genomes]
rs363321	0.92[EUR][1000 genomes]
rs363322	1.00[CEU][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs363344	1.00[CEU][hapmap]
rs363351	1.00[CEU][hapmap]
rs363352	1.00[CEU][hapmap]
rs363364	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs363405	1.00[CEU][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs363412	1.00[TSI][hapmap]
rs3847482	1.00[CEU][hapmap]
rs3847483	1.00[CEU][hapmap]
rs3847484	1.00[CEU][hapmap]
rs3858329	1.00[CEU][hapmap]
rs3858331	1.00[CEU][hapmap]
rs57663418	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58968504	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60912143	0.80[AFR][1000 genomes]
rs61560104	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7899301	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119001600-119010200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:119001600-119013400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:119001800-119011800	Weak transcription	Ovary	ovary
4	chr10:119008800-119010400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr10:119009000-119010800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:119009000-119011400	Enhancers	Primary T cells from cord blood	blood
7	chr10:119009000-119012400	Enhancers	Thymus	Thymus
8	chr10:119009000-119012600	Enhancers	Fetal Thymus	thymus
9	chr10:119009200-119017600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr10:119009600-119011200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:119009600-119018600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr10:119009800-119010000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:119009800-119011000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:119009800-119018400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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