Variant report

Variant	rs363364
Chromosome Location	chr10:118981692-118981693
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118976223..118977870-chr10:118979893..118982882,2	K562	blood:
2	chr10:118975183..118978653-chr10:118979198..118982710,3	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12571226	1.00[CEU][hapmap]
rs17095818	1.00[CEU][hapmap]
rs17095821	1.00[CEU][hapmap]
rs17095824	1.00[CEU][hapmap]
rs17095831	1.00[CEU][hapmap]
rs17095832	1.00[CEU][hapmap]
rs17095848	1.00[CEU][hapmap]
rs17095936	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17095973	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2532802	0.92[EUR][1000 genomes]
rs2619098	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619099	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619101	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28634565	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3026039	1.00[CEU][hapmap]
rs363306	1.00[CEU][hapmap]
rs363307	1.00[CEU][hapmap]
rs363313	1.00[CEU][hapmap]
rs363315	1.00[CEU][hapmap]
rs363318	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs363319	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs363320	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs363321	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs363322	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs363344	1.00[CEU][hapmap]
rs363351	1.00[CEU][hapmap]
rs363352	1.00[CEU][hapmap]
rs363405	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3753127	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3847482	1.00[CEU][hapmap]
rs3847483	1.00[CEU][hapmap]
rs3847484	1.00[CEU][hapmap]
rs3858329	1.00[CEU][hapmap]
rs3858331	1.00[CEU][hapmap]
rs57663418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58968504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60912143	0.86[AFR][1000 genomes]
rs61560104	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7899301	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv896038	chr10:118917671-119002667	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
3	esv1812234	chr10:118977123-119004095	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118980000-118981800	Enhancers	A549	lung
2	chr10:118980400-118983200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:118980600-118983400	Enhancers	Brain Germinal Matrix	brain
4	chr10:118980800-118981800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:118981000-118981800	Enhancers	NH-A	brain
6	chr10:118981200-118982200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:118981200-118983400	Enhancers	Fetal Brain Male	brain
8	chr10:118981200-118984600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr10:118981600-118987200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links