Variant report

Variant	rs61560104
Chromosome Location	chr10:119003161-119003162
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17095936	0.92[EUR][1000 genomes]
rs17095973	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2532802	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2619098	0.92[EUR][1000 genomes]
rs2619099	0.92[EUR][1000 genomes]
rs2619101	0.92[EUR][1000 genomes]
rs28634565	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs363318	0.92[EUR][1000 genomes]
rs363319	0.92[EUR][1000 genomes]
rs363320	0.92[EUR][1000 genomes]
rs363321	0.92[EUR][1000 genomes]
rs363322	0.92[EUR][1000 genomes]
rs363364	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs363405	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3753127	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57663418	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58968504	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60912143	0.97[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7899301	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	esv1812234	chr10:118977123-119004095	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119001600-119010200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:119001600-119013400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:119001800-119008000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr10:119001800-119011800	Weak transcription	Ovary	ovary
5	chr10:119002200-119003400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:119002200-119008200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr10:119002400-119003400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:119003000-119003600	Weak transcription	Primary T cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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