Variant report

Variant	rs17095936
Chromosome Location	chr10:118986749-118986750
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:118986135..118987184-chr10:119077937..119079062,4	MCF-7	breast:
2	chr10:118986124..118987057-chr10:119078134..119080313,8	MCF-7	breast:
3	chr10:118986459..118987203-chr10:119079340..119080149,2	K562	blood:
4	chr10:118975810..118976793-chr10:118986044..118987013,2	MCF-7	breast:
5	chr10:118986106..118987073-chr10:119079163..119080252,5	MCF-7	breast:
6	chr10:118975767..118976754-chr10:118986014..118987065,3	K562	blood:

Variant related genes	Relation type
ENSG00000165650	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12571226	1.00[CEU][hapmap]
rs17095818	1.00[CEU][hapmap]
rs17095821	1.00[CEU][hapmap]
rs17095824	1.00[CEU][hapmap]
rs17095831	1.00[CEU][hapmap]
rs17095832	1.00[CEU][hapmap]
rs17095848	1.00[CEU][hapmap]
rs17095973	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2532802	0.92[EUR][1000 genomes]
rs2619098	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619099	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619101	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28634565	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3026039	1.00[CEU][hapmap]
rs363306	1.00[CEU][hapmap]
rs363307	1.00[CEU][hapmap]
rs363313	1.00[CEU][hapmap]
rs363315	1.00[CEU][hapmap]
rs363318	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs363319	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs363320	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs363321	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs363322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs363344	1.00[CEU][hapmap]
rs363351	1.00[CEU][hapmap]
rs363352	1.00[CEU][hapmap]
rs363364	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs363405	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs3753127	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs3847482	1.00[CEU][hapmap]
rs3847483	1.00[CEU][hapmap]
rs3847484	1.00[CEU][hapmap]
rs3858329	1.00[CEU][hapmap]
rs3858331	1.00[CEU][hapmap]
rs57663418	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58968504	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61560104	0.92[EUR][1000 genomes]
rs7899301	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv896038	chr10:118917671-119002667	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
3	esv1812234	chr10:118977123-119004095	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118981600-118987200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr10:118986200-118987000	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr10:118986400-118986800	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr10:118986400-118986800	Flanking Active TSS	Brain Substantia Nigra	brain
5	chr10:118986600-118986800	Enhancers	A549	lung
6	chr10:118986600-118987200	Bivalent Enhancer	Brain Angular Gyrus	brain
7	chr10:118986600-118987200	Enhancers	Brain Cingulate Gyrus	brain

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