Variant report

Variant	rs12571226
Chromosome Location	chr10:118977576-118977577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17095818	1.00[CEU][hapmap]
rs17095821	1.00[CEU][hapmap]
rs17095824	1.00[CEU][hapmap]
rs17095831	1.00[CEU][hapmap]
rs17095832	1.00[CEU][hapmap]
rs17095848	1.00[CEU][hapmap]
rs17095936	1.00[CEU][hapmap]
rs17095973	1.00[CEU][hapmap]
rs2619098	1.00[CEU][hapmap]
rs3026039	1.00[CEU][hapmap]
rs363306	1.00[CEU][hapmap]
rs363307	1.00[CEU][hapmap]
rs363313	1.00[CEU][hapmap]
rs363315	1.00[CEU][hapmap]
rs363322	1.00[CEU][hapmap]
rs363344	1.00[CEU][hapmap]
rs363351	1.00[CEU][hapmap]
rs363352	1.00[CEU][hapmap]
rs363405	1.00[CEU][hapmap]
rs3753127	1.00[CEU][hapmap]
rs3847482	1.00[CEU][hapmap]
rs3847483	1.00[CEU][hapmap]
rs3847484	1.00[CEU][hapmap]
rs3858329	1.00[CEU][hapmap]
rs3858331	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv896038	chr10:118917671-119002667	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
3	esv1812234	chr10:118977123-119004095	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118975600-118977600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr10:118976000-118977600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
3	chr10:118976600-118977600	Flanking Active TSS	Esophagus	oesophagus
4	chr10:118976800-118977600	Bivalent/Poised TSS	Primary T cells from cord blood	blood
5	chr10:118977000-118977600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr10:118977000-118980400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:118977200-118977600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
8	chr10:118977200-118977600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:118977200-118977600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:118977200-118977600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:118977200-118980600	Weak transcription	HMEC	breast
12	chr10:118977200-118980800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:118977400-118977600	Flanking Active TSS	Brain Germinal Matrix	brain
14	chr10:118977400-118978800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:118977400-118980000	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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