Variant report

Variant	rs28634565
Chromosome Location	chr10:118986857-118986858
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17095936	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17095973	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2532802	0.92[EUR][1000 genomes]
rs2619098	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619099	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619101	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs363318	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs363319	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs363320	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs363321	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs363322	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs363364	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs363405	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3753127	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57663418	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58968504	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60912143	0.85[AFR][1000 genomes]
rs61560104	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7899301	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv896038	chr10:118917671-119002667	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
3	esv1812234	chr10:118977123-119004095	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118981600-118987200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr10:118986200-118987000	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr10:118986600-118987200	Bivalent Enhancer	Brain Angular Gyrus	brain
4	chr10:118986600-118987200	Enhancers	Brain Cingulate Gyrus	brain
5	chr10:118986800-118987600	Enhancers	Brain Substantia Nigra	brain
6	chr10:118986800-118987600	Bivalent Enhancer	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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