Variant report

Variant	rs12572659
Chromosome Location	chr10:18425999-18426000
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10734038	0.81[EUR][1000 genomes]
rs10764325	0.82[EUR][1000 genomes]
rs10828269	0.82[EUR][1000 genomes]
rs10828277	0.81[EUR][1000 genomes]
rs11012783	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11596960	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12570727	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12770520	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1331330	0.83[EUR][1000 genomes]
rs2357790	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2840320	0.83[EUR][1000 genomes]
rs7895735	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7901551	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18423800-18426400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr10:18424200-18428800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:18425000-18428600	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:18425000-18428600	Weak transcription	Fetal Heart	heart
5	chr10:18425200-18428600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:18425400-18428400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:18425600-18426000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr10:18425600-18426000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr10:18425600-18426000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr10:18425600-18426400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr10:18425600-18426400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr10:18425600-18426600	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr10:18425600-18428800	Weak transcription	Brain Anterior Caudate	brain
14	chr10:18425800-18426400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr10:18425800-18428600	Weak transcription	Brain Substantia Nigra	brain
16	chr10:18425800-18429000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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