Variant report

Variant	rs1331330
Chromosome Location	chr10:18435016-18435017
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10734038	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10740993	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10740995	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10740996	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10741003	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10764325	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10764326	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10764327	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10764329	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10764331	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10764332	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10828269	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10828277	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10828280	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11596960	0.81[EUR][1000 genomes]
rs12572659	0.83[EUR][1000 genomes]
rs12770520	0.82[EUR][1000 genomes]
rs2183718	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2357790	0.83[EUR][1000 genomes]
rs2840320	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7080195	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7100500	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054616	chr10:18433954-18451969	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18430600-18446400	Weak transcription	Brain Angular Gyrus	brain
2	chr10:18430800-18442400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:18431000-18440600	Weak transcription	Fetal Intestine Small	intestine
4	chr10:18431200-18437400	Weak transcription	Fetal Stomach	stomach
5	chr10:18431200-18440600	Weak transcription	Aorta	Aorta
6	chr10:18431200-18447800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:18431200-18447800	Weak transcription	Fetal Intestine Large	intestine
8	chr10:18431400-18437600	Weak transcription	Right Ventricle	heart
9	chr10:18431400-18440600	Weak transcription	Ovary	ovary
10	chr10:18431400-18441200	Enhancers	Rectal Smooth Muscle	rectum
11	chr10:18431400-18468800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr10:18432200-18435200	Enhancers	Fetal Heart	heart
13	chr10:18432400-18440000	Weak transcription	Fetal Brain Male	brain
14	chr10:18432600-18446800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr10:18432600-18448000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr10:18433200-18435400	Enhancers	Colon Smooth Muscle	Colon
17	chr10:18433600-18436000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr10:18433800-18435200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:18433800-18435400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:18433800-18435400	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr10:18433800-18435400	Enhancers	Fetal Lung	lung
22	chr10:18434200-18444000	Weak transcription	Primary hematopoietic stem cells	blood
23	chr10:18434200-18448000	Weak transcription	Pancreas	Pancrea
24	chr10:18434400-18435200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:18434600-18435200	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr10:18434800-18436000	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr10:18434800-18436000	Enhancers	Left Ventricle	heart
28	chr10:18435000-18436600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr10:18435000-18436800	Enhancers	Stomach Smooth Muscle	stomach
30	chr10:18435000-18454200	Weak transcription	Brain Anterior Caudate	brain
31	chr10:18435000-18467200	Weak transcription	Brain Hippocampus Middle	brain

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