Variant report

Variant	rs10764331
Chromosome Location	chr10:18451836-18451837
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18450176..18452419-chr10:18453993..18456131,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10734038	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10740993	1.00[ASW][hapmap];0.88[CEU][hapmap];0.81[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.87[JPT][hapmap];0.91[LWK][hapmap];0.96[MEX][hapmap];0.82[MKK][hapmap];0.93[TSI][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10740995	0.83[CEU][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10740996	0.88[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10741003	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10764325	1.00[ASW][hapmap];0.88[CEU][hapmap];0.81[CHB][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];0.91[LWK][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10764326	0.94[ASW][hapmap];0.92[CEU][hapmap];0.81[CHB][hapmap];0.86[CHD][hapmap];0.98[GIH][hapmap];0.87[JPT][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10764327	0.91[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10764329	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10764332	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828269	0.85[CEU][hapmap];0.81[CHB][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10828277	0.91[CEU][hapmap];0.86[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10828280	0.94[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.91[LWK][hapmap];0.91[MEX][hapmap];0.87[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1331330	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2183718	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2183719	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap]
rs2840320	0.88[CEU][hapmap];0.82[CHD][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.81[YRI][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7080195	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7100500	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054616	chr10:18433954-18451969	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10764331	CACNB2	cis	cerebellum	SCAN
rs10764331	PTPLA	cis	cerebellum	SCAN

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18431400-18468800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:18435000-18454200	Weak transcription	Brain Anterior Caudate	brain
3	chr10:18435000-18467200	Weak transcription	Brain Hippocampus Middle	brain
4	chr10:18443800-18459000	Weak transcription	Fetal Intestine Small	intestine
5	chr10:18444600-18456000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:18444600-18457000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:18444600-18458400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr10:18444600-18466800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:18448200-18453400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:18448400-18452800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:18448400-18454000	Weak transcription	Left Ventricle	heart
12	chr10:18448400-18454200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr10:18448400-18469000	Weak transcription	Right Ventricle	heart
14	chr10:18448600-18452400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr10:18448600-18452400	Weak transcription	Ovary	ovary
16	chr10:18448600-18452600	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr10:18448600-18452800	Weak transcription	Osteobl	bone
18	chr10:18448600-18454200	Weak transcription	Aorta	Aorta
19	chr10:18448800-18452000	Weak transcription	Fetal Stomach	stomach
20	chr10:18448800-18452400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr10:18448800-18452600	Weak transcription	NHLF	lung
22	chr10:18448800-18453200	Weak transcription	HSMM	muscle
23	chr10:18448800-18453800	Weak transcription	Fetal Brain Female	brain
24	chr10:18449000-18452600	Weak transcription	Fetal Heart	heart
25	chr10:18449000-18452800	Weak transcription	Stomach Smooth Muscle	stomach
26	chr10:18449000-18453600	Weak transcription	Fetal Brain Male	brain
27	chr10:18449800-18452600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:18449800-18452800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr10:18450000-18452400	Weak transcription	Colon Smooth Muscle	Colon
30	chr10:18450000-18452400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr10:18450000-18452600	Weak transcription	NHDF-Ad	bronchial
32	chr10:18450000-18453400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr10:18450200-18452600	Weak transcription	Hela-S3	cervix
34	chr10:18450800-18452000	Enhancers	Pancreatic Islets	Pancreatic Islet
35	chr10:18451200-18452400	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr10:18451200-18452800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr10:18451400-18452400	Strong transcription	Fetal Lung	lung
38	chr10:18451600-18453000	Enhancers	Pancreas	Pancrea

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