Variant report

Variant	rs10740995
Chromosome Location	chr10:18445088-18445089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10734038	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10740993	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10740996	0.82[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10741003	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10764325	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10764326	0.92[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10764327	0.95[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap];0.88[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10764329	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10764331	0.83[CEU][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10764332	0.83[CEU][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10828269	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10828277	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10828280	0.92[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap];0.88[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1331330	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2183718	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2183719	0.81[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap]
rs2840320	0.96[CEU][hapmap];0.85[CHB][hapmap];0.96[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7080195	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7100500	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054616	chr10:18433954-18451969	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18430600-18446400	Weak transcription	Brain Angular Gyrus	brain
2	chr10:18431200-18447800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:18431200-18447800	Weak transcription	Fetal Intestine Large	intestine
4	chr10:18431400-18468800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr10:18432600-18446800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr10:18432600-18448000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr10:18434200-18448000	Weak transcription	Pancreas	Pancrea
8	chr10:18435000-18454200	Weak transcription	Brain Anterior Caudate	brain
9	chr10:18435000-18467200	Weak transcription	Brain Hippocampus Middle	brain
10	chr10:18436000-18448200	Weak transcription	Left Ventricle	heart
11	chr10:18440800-18446800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr10:18440800-18447000	Weak transcription	Fetal Brain Female	brain
13	chr10:18441200-18445800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr10:18441200-18446800	Weak transcription	Aorta	Aorta
15	chr10:18441400-18445400	Weak transcription	Colon Smooth Muscle	Colon
16	chr10:18441600-18446400	Weak transcription	Fetal Brain Male	brain
17	chr10:18441600-18447800	Weak transcription	Fetal Stomach	stomach
18	chr10:18441600-18447800	Weak transcription	Ovary	ovary
19	chr10:18441800-18448200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr10:18443800-18445400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr10:18443800-18459000	Weak transcription	Fetal Intestine Small	intestine
22	chr10:18444600-18447000	Weak transcription	Fetal Lung	lung
23	chr10:18444600-18447200	Weak transcription	Fetal Heart	heart
24	chr10:18444600-18447800	Weak transcription	Stomach Smooth Muscle	stomach
25	chr10:18444600-18451200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr10:18444600-18456000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr10:18444600-18457000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr10:18444600-18458400	Weak transcription	Primary hematopoietic stem cells	blood
29	chr10:18444600-18466800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr10:18444800-18446000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr10:18444800-18451200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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