Variant report

Variant	rs7080195
Chromosome Location	chr10:18459147-18459148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10734038	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10740993	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10740995	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10740996	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10741003	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10764325	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10764326	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10764327	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10764329	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10764331	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10764332	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10828269	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10828277	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10828280	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1331330	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2183718	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2840320	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7100500	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522505	chr10:18453209-18465479	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18431400-18468800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:18435000-18467200	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:18444600-18466800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr10:18448400-18469000	Weak transcription	Right Ventricle	heart
5	chr10:18452800-18466600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:18453000-18459600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr10:18453800-18465000	Weak transcription	Fetal Heart	heart
8	chr10:18454600-18462200	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:18454600-18467000	Weak transcription	Fetal Lung	lung
10	chr10:18454600-18467200	Weak transcription	Fetal Stomach	stomach
11	chr10:18454600-18467600	Weak transcription	Aorta	Aorta
12	chr10:18454600-18469000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:18454800-18460600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr10:18454800-18461400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:18454800-18465800	Weak transcription	Stomach Smooth Muscle	stomach
16	chr10:18454800-18466800	Weak transcription	Brain Anterior Caudate	brain
17	chr10:18456800-18466800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr10:18457600-18467600	Weak transcription	Ovary	ovary
19	chr10:18458600-18459200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr10:18459000-18459200	ZNF genes & repeats	Fetal Intestine Small	intestine
21	chr10:18459000-18459200	Genic enhancers	Left Ventricle	heart
22	chr10:18459000-18466600	Weak transcription	Primary hematopoietic stem cells	blood

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